Wednesday, March 17, 2010

Change in Plans

As a result of Step One testing on Thursday, the quiz is now moved to Monday. Today (and tomorrow for D and F blocks) we will watch the next segment of the PBS Evolution Series: Extinction! Students will answer the following questions while they watch the video.

1. Give a brief definition of extinction.
2. Approximately how many species that have ever lived on the planet have ever gone extinct?

3. On average a species dies out at ______________ years on earth.

4. How many mass extinctions have happened in the last 500 million years?

5. What were some of the environmental changes that happened to cause such a mass extinction?

6. How long did it take for the first dinosaurs to evolve?


7. Describe the behavior and physical appearance of mammals while dinosaurs were "ruling the world"

8. What was the K-T extinction event?


9. What happens to mammals as a result of this event?


10. When and where did the first human-like primates emerge?


11. What has happened to the rate of extinction since the human population has exploded?

12. What is the disappearance of large carnivores a sign of?


13. What are the relationships among plants, herbivores, and carnivores?


14. What is a primary cause of extinction?


15. Describe the formation of Hawaii's unique ecosystem


16. Two examples of invasive species: zebra mussels and brown tree snakes. Describe one of these two examples.


17. Describe: In North Dakota, using one weed species to battle another: leafy spurge versus flea beetle


18. What do you think: Is it too late to stop change in the Thai forests?


19. Can we slow the rate of human-caused species extinction and return to the natural cycle of evolution and extinction?

Tuesday, March 16, 2010

Great Transformations

Today we watched the video "Great Transformations" from the PBS Evolution series. Click the picture to link to the Video's website. Students answered the questions below while they watched the video.

1. What are the human connections to all animal life

2. How can we understanding human evolution through the study of whale evolution?

3. Write brief definition and history of mammals.

4. How did land-based mammals return to the sea?

5. How can fossils from "transitional species" trace whale evolution?

6. What can studying whale movement tell us about the evolutionary relationship with land mammals?

7. Describe the paleontological research into early tetrapod fossils

8. Which came first: leaving the water or developing legs?

9. What is the transition from fins to limb? How is it an evolutionary survival strategy

10. What happened in the Cambrian explosion?

11. What is the Burgess Shale and its rich fossil record?

12. What are Trilobites?

13. What are Pikia?

14. What can Fruit fly research tell us about evolution and genes?

15. What clues can embryo development give us about evolution?

16. What can studying primate movement tell us about our human ancestors and evolution?

17. Was the existence of homosapiens inevitable?

Homework: none

Monday, March 15, 2010

The Earth's Early History

Today students had a reading quiz on section 17.2 and their first pop quiz of the year. What was the point of the pop quiz? To see if students got anything out of spending three class periods working on a geologic timeline. The early verdict: Not all that worth it. Next year there will be questions that go along with the timeline.

Students worked in pairs to answer questions about the Miller-Urey experiment and then we watched this explanation of how Miller and Urey set up their experiment.



Students also learned about the endosymbiotic theory as well as how Earth's early atmosphere compares to the current atmosphere.

Homework:
Workbook pages 189-193
Questions:
page 189: #6-8
page 190: all
page 191:17-21
page 192 & 193: all

Please do NOT tear the pages out of the workbook. Bring your workbooks to class.

If you are in the play, you may have until Thursday to complete this assignment.

Friday, March 12, 2010

Finishing timelines

Today students finished their timelines and added a few more details of their choosing.

Everyone needed to look up and add to their timeline the following events:

Cambrian explosion
Permian period mass extinction
Archaeopteryx
Chicxulub
Bipedalism
Australopithecus

Thursday, March 11, 2010

Working on Geologic Timelines

Today and tomorrow students will continue to work on their geologic timelines.

Breaking News:

Scientists reaffirm theory that giant asteroid killed dinosaurs

"(CNN) -- A team of scientists has agreed that a giant asteroid killed off dinosaurs and a majority of other species on Earth more than 65 million years ago...." click here to read the article

Tuesday, March 9, 2010

Constructing an Evolutionary Timeline

Today and in the next class period, students are working on constructing an Evolutionary timeline. To see the amazing John Kyrk timeline we view in class, click here. I suggest watching it a few times and preferably on a large screen so you are able to see all that the animation offers.

Below are the events which will be placed on the timeline:
Geological Events: When (in millions of years)
Pleistocene Ice Age 1.6
Land bridge between North and South America 5.7
Antarctic Ice cap 24
Mississippi River 35
Separation of Antarctica and Australia 50
Formation of the Himalayas 55
Formation of the Rocky Mountains 70
Breakup of Pangea 165
Oxygen building up in atmosphere 600-2500
Formation of the earth 4600

Biological Events

Pictograms (written communication) .005
Modern humans .04
Neanderthals .10

Manufactures stone tools 2.5
Lucy 3.2
Hominids 4.0
Monkeys 35
Primates 65
Flowering plants 140
Birds 150
Mammals 225
Dinosaurs 235
Reptiles 300
Seed producing plants 350
Amphibians 360
Land animals 400
Land plants 430
Vertebrates 520
Animals with hard shells 590
Soft bodied animals 680
Multicellular organisms 1000
Eukaryotes 1400
Bacteria 3500

Note: 1 billion equals 1000 million

*This timeline activity has been adapted from BSCS Biology: A Human Approach.

Monday, March 8, 2010

Evolution Test Today

Today students took a test on microevolution and speciation (chapters 15 and 16).

Tomorrow we will be starting chapter 17, which focuses on the fossil record, the Earth's early history, the evolution of multicelluar life and patterns in macroevolution.

Homework: Read section 17.1. Take notes for a reading quiz.

Friday, March 5, 2010

Review for Evolution Test

Today we reviewed for the test on Monday by playing jeopardy. You can download the powerpoint directly by clicking the link in your email. Several students requested to see other examples of animal courtship, so two are below.





Tuesday, March 2, 2010

A step in speciation

Today we did an activity where students plotted actual data from R.C. Stebbins work at the University of California (Berkeley). The species studied was Esantina eschscholtzii.

Homework: finish the plotting and analysis questions. This is due at your next class. The color pictures of the salamanders have been emailed to you and are posted below. You will need a topographical map to answer some of the questions and this is also posted below. You can click on the pictures to make them larger.

Notes on completing the analysis questions:

Use the map below to answer questions 2 and 5, in part A and question 3 in part B.
Use the pictures of the salamanders (below) to answer question 4 in Part A and question 2 in Part B.

Monday, March 1, 2010

Quiz Today

Today we had a quiz on microevolution. Tomorrow we will be interpreting ACTUAL data from research on speciation.

Please bring a yellow highlighter and any colored pencils/pens/markers you have to class.

Thursday, February 25, 2010

Peppered Moths & Populations

Yesterday and today students took notes on populations as well as did an activity on microevolution and selection in peppered moths.



NOTE: there is one error in this clip. The narrator says "and so the moths began to evolve." What's wrong with this statement?

Homework: none

On Monday you will have a quiz on the packet.

We also had time for this National Geographic clip on adaptation in underwater creatures.

Tuesday, February 23, 2010

Methods of Evolution and a Case study

Today we talked about the methods of evolution (mutation, migration, natural selection and genetic drift)

In class we started to read a case study about the evolution of quiet crickets. The top photo is the normal cricket, the bottom photo is the cricket infested with maggots.

Homework: Finish reading the case study "Quick evolution leads to quiet crickets."Make sure look up the words you don't understand as well as write the key point in each paragraph.

Monday, February 22, 2010

Evolution

What is evolution? What is not evolution?

Today we learned about Charles Darwin and other leading scientists who helped shape the theory of evolution.

Homework: Watch the video clip below and answer the questions in your packet. In case you have "misplaced" the packet, the questions are below the video as well.




Questions (which are adapted from the PBS teacher's website)
1. Below are four components of natural selection. Describe each of these components.

Genetic variation:

Overproduction of offspring:

Struggle for existence:

Differential survival and reproduction:

2. What kinds of limited resources can create a struggle between individuals in a population?

3. What kinds of variable traits within a population might natural selection act upon?

4. How does natural selection affect the genetic variation within the next generation of the same population?

Friday, February 12, 2010

DNA replication, transcription and translation projects

DNA Replication Poster


Yes, that IS marzipan DNA and RNA!

And that, my friends, is a translation pie.

Gel Electrophoresis

On Wednesday and Thursday we did Gel Electrophoresis using food coloring to see how molecules of different sizes move through the gel. The first step was to load the gels.
One all of the wells are loaded, an electrical current is run through the gel to move the molecules.

Voila! Results! Look closely and you can see that the black in the first well (on the bottom), has actually separated out into a purple and an orange. Blue is the largest molecule and therefore it moved the shortest distance. Gels were made with 2.5g agarose and 250mL 1x TAE buffer and run for ~ 20 minutes.

Tuesday, February 9, 2010

Gel Electrophoresis Homework

To prepare for lab this week go to the Virtual Gel Electrophoresis Lab and click through the animation.

You will have a prelab quiz, any notes you take, you can use for the quiz.

Monday, February 8, 2010

Genetically Modified Foods

How do you think scientists create genetically modified organisms? Even if you have no idea, write something down, THINK CREATIVELY!

2. We are going to watch an animation on Recombinant DNA technology. The questions that follow relate to this animation.

a. What is a vector?

b. What is a plasmid?

c. What are restriction enzymes?

d. What are the “sticky ends” of the gene segments? Use a drawing in your answer.

e. What is a transgenic plant?

3. What do you think are some of the benefits of transgenic organisms (T.O) (list at least 4)

4. What do you think are some of the controversies surrounding T.O.’s (list at least 4)

5. Video Monsanto: How does this make you feel about GMOs/TOs? Write at least 4 sentences.


Video India: How does this make you feel about GMOs/TOs? Write at least 4 sentences.


7. Video: The Future of Food Intro. What are three things you learned from this video clip?


Homework: Find an article on genetically modified foods. This article must be from 2007 to the present. Complete the article summary sheet.

Places to look for articles include: http://news.nationalgeographic.com/news/

www.sciencedaily.com

www.bbc.co.uk

www.npr.org

Samples of Student work

Below are samples of some DNA replication, transcription and translation projects I have received in the past.

Friday, February 5, 2010

DNA replication, transcription and translation project.

Your project is due Friday February 12th, in class. You will be presenting your projects. This counts as a test grade. Click on the images below to see the rubric, each group will also get a copy of it on Monday, in class.


NOTE: This rubric has changed! The original rubric posted left off points for properly citing your sources. This is now part of the rubric.

Thursday, February 4, 2010

Transcription & Translation

Today we recapped DNA replication and started to learn about transcription and translation. Students took notes in their packets and we watched the video clip below. There's no homework tonight because of the International Food Fair.

Tuesday, February 2, 2010

DNA extraction

Today students extracted DNA from strawberries. Yvo, Claudia, Mariam and Finn had spectacular results.

After the lab, we started to learn about DNA replication. Tonight for homework complete the DNA replication worksheet using the online animation.

Click the picture below to link to the animation.


Monday, February 1, 2010

Intro to DNA

Today we talked about the structure and function of DNA as well as how Hershey and Chase determined that DNA, not protein, is the genetic material.

Click their picture to link to the animation we watched in class.

How small is DNA? Really small! Click here to view the slider we saw in class.

Homework: 1. Read the lab handout for tomorrow. You will have a short quiz on the procedure. Want to see the virtual DNA extraction lab? Click here.

Homework 2: Test corrections! For each question you got wrong, or lost points on, you need to rewrite the question and the correct answer on a separate sheet of paper.

Thursday, January 28, 2010

Gene Linkage and Nondisjunction

What's a karyotype? What happens when homologous pairs don't split evenly during anaphase 1? How can scientists determine how close together genes are on a chromosome?

These are just a few of the questions we answered yesterday and today.
Homework: study for the test tomorrow. You can pick up your quizzes on the class door after school today.

Monday, January 25, 2010

Quiz and Meiosis

Today students had a 20 minute quiz on sections 11.1-11.3. After which we started to learn about meiosis.

..
We watched the video clip above and then took notes on the individual stages of Meiosis as well as the difference and importance between haploid and diploid cells.

Homework: Draw and label the stages of meiosis (from pages 276-277 in your book).

Friday, January 22, 2010

Variations on Mendel's Principles

Today we expanded on Mendel's principles and looked at:

Incomplete dominance
Codominance
Pleiotropy
Polygenic inheritance
Environmental effects on phenotypes

Remember to study for your quiz on Monday!

Thursday, January 21, 2010

Dragon Genetics

Students created their very own dragons to see how Mendel's laws of segregation and independent assortment work.

On Friday the following analysis questions are due, as well as drawings of each dragons.

1. How does dropping the stick on the table and transcribing the letters on the sides facing up follow Mendel’s Law of Segregation? [First state the law.]

2. Explain how dropping the green, orange, and red sticks illustrates Mendel’s Law of Independent Assortment? [First state the law.]

3. The gene for fangs is recessive, yet most of the dragons have fangs. How can this happen? [Hint. The gene that causes dwarfism (achondroplasia) in humans is dominant.]

4. What is the sex of your baby?

5. What traits are sex-linked? [First define “sex-linked”.]

6. Identify any gene deletions or inversions in the chromosomes you have.

7a. What traits are more likely to be found in males? [Consider sex-linked,

sex-influenced and sex-limited traits.]

7b. How might these be an advantage to this sex? [Be creative in your answers.]

8a. What traits are more likely to be found in females?

8b. How might these be an advantage to this sex?


This lab comes Brynmawr.

Tuesday, January 19, 2010

Punnett Squares & Pedigrees

Today students learned how to use the multiplication rule so they can avoid making punnett squares like the one below.

We also looked at how to read a pedigree and trace genetic disorders through a family. Below is Queen Victoria's family tree. The royal family has a high incidence of hemophilia.
Homework: Complete the practice problems on page 3 of the packet.

Monday, January 18, 2010

Welcome Back.... Starting Classical Genetics

Today we started Chapter 11 and the basics of Mendelian Genetics. Key concepts and vocab discussed include:

Lamarkism
allele
loci
homologous chromosomes
homozygous dominant
homozygous recessive
heterozygous
geneotype
phenotype
Principle of Segregation
Principle of Independent Assortment
Test Cross
Punnet Square
Monohybrid cross
Carrier
P generation
F1 generation
F2 generation

Phew! That's quite a few words/concepts. The material we are starting now has a substantial amount of terms, so make sure you start to make flashcards (if you need them) sooner rather than later.

Homework: Read section 11.2 and take notes, you will have a reading quiz. Also, complete the vocab section (part 2) of the worksheet we did in class today.

The Roloff Family, stars of TLC's Little People, Big World have brought dwarfism (achondroplasia) to the big screen. Achondroplasia is a genetic disorder that is caused by a dominant allele. The parents are heterozyous for the trait, which is why some of their children are not affected by the by the disorder.

Thursday, December 10, 2009

Virtual Textbook

Click here to be taken to a site with chapter reviews with summaries, animations, quizzes and flashcards. NOTE: Since this is not our exact book, there will be some things that we have not covered. Do not freak out about this.

The chapters numbers on this site which relate to what we have studied are:
5, 6, 7, 8, 9 and parts of 25 and 27.

And for something to smile about... Don't be this person, study!

Tuesday, December 8, 2009

Review

In class assignment:
page 76: 5, 6, 9, 13
page 77: 14, 15, 16, 20
page 78: 22, 23, 24, 28-34
page 80: all questions
page 81: all questions
page 82: 21
page 83:4
page 84: optional

homework due next class:
read pages 85 and 86
answers all questions on pages 87 & 88
page 89: 1, 5, 6, 7
all questions on page 90.

Wednesday, December 2, 2009

Disease Progress of HIV

Today (and tomorrow for D and F blocks) will be focusing on the disease progression of HIV as well as watching a mini documentary on living with HIV.



Homework: Complete the study plan worksheet. This is due in class on Friday.
D and F blocks, if you would like to get a head start on this tonight, I will leave the worksheets on the door to our classroom.

Tuesday, December 1, 2009

Final Exam Essay Questions

You have been emailed the final exam essay questions 2 of these questions will be on your exam. You will not know which questions until you open your exam.

Please do not ask which of the two questions will be on the test.

You may NOT use any notes on the exam.

Your exam is Tuesday December 15 at 8:00 AM (I'm not sure of the location yet).

World AIDS Day: South Africa to treat all HIV positive children

South African President Jacob Zuma, during his World AIDS Day speech, announced that South Africa would provide treatment for all HIV-positive children, a dramatic step forward for a country with the world's highest rate of people diagnosed as HIV positive.

Mr. Zuma's pledge marks a departure from the policies of his predecessor, President Thabo Mbeki, who disputed the scientific evidence linking HIV with AIDS, and who actively discouraged the rollout of antiretroviral treatments to help AIDS patients live longer, more productive lives.

Speaking to an enthusiastic crowd in the nation's capital in Tshwane (Pretoria), Zuma compared the fight against AIDS with the struggle for freedom against the white-racist rule of apartheid.

"That time has now come in our struggle to overcome AIDS," Zuma said. "Let us declare now, as we declared then, that we shall not submit." To read the full article, click here.

In an amazing co-incidence, we managed to start our short unit on HIV on World AIDS Day.

Today we focused on the structure of HIV as well as its life cycle. Click here to see the video we watched in class on the life cycle of HIV.


AIDS clock

Monday, November 30, 2009

Skeleton Wrap Up

Today we finished the bones and our skeletons. Tomorrow we will be starting three days on HIV/AIDS and the immune system. Later today I will post a picture of some of the skeletons.

Wednesday, November 25, 2009

Build a skeleton!

Working in groups of 3 you and your partners will build a skeleton complete with bones and joints. You will even add muscles in select places.

Follow the steps below to help guide you. Your skeleton should be between 1 and 2 meters tall.

  1. Using the bone diagram which you just labeled, you will start by recreating these bones to SCALE on paper. Each time you make a bone, label it!

  1. Once you have cut out and labeled all of the bones, think about what types of joints are found between the bones. NOTE: you do not need to make all of the joints in the hands and feet, nor in the spine. Instead, for example, on the hands, write that there are 27 bones in the hand, these are connected by saddle joints.Use paper clips, string, hole punches or other fasteners of your choice to make the joints move correctly. Remember that ligaments connect bone to bone. This is supposed to be a challenge! Think creatively!

  2. Using red paper, make muscles for the quadriceps, hamstrings, biceps and triceps. Label these muscles, as well as write a brief description of how muscles work.



Monday, November 23, 2009

class in biolab tomorrow

We will have class in our regular room tomorrow. The dance studio is unavailable.

Addiction & and Bones!

Today students took a quiz on the brain and addiction. We spent the latter part of class introducing the skeletal system. Tonight for homework please read sections 36.1 and 36.2. Take notes! You will have a reading quiz.

Saturday, November 21, 2009

Quiz and Reflection

On Monday you will have a quiz on all of the information we learned last week on the brain and the effects of drugs on the brain. You will have 25 minutes for the quiz, after which we will start on the musculo-skeletal system.

There is an opportunity for extra credit....read on!

Write a reflection answering the following questions. Your reflections will be graded (spelling, punctuation, content and thoughtfulness all count!) Your grade on the reflection will replace your lowest quiz grade. You should write about one paragraph for each question and your responses should be typed. I will not accept emailed responses and you need to turn this in during class.

1. Explain what you think were the three most interesting things you learned about the brain and addiction. Why were these things so interesting?

2. Did what you learn in the past week change your perspective on the brain and drugs? Explain why or why not.

3. What additional information would you have liked on this topic? Be detailed

Wednesday, November 18, 2009

Drugs influence neurotransmitters

Today we examined how various drugs impact neurotransmitters and how the route of drug administration affects a drug user.

Homework: read the information below and take notes. You will have a reading quiz on Friday. I realize it looks like a lot of information, but it's really only equivalent to 4ish pages in your text book.

Basic Science–Health Connection

Drug addiction is a complex brain disease. Preventing drug abuse and addiction and treating the disease effectively require understanding the biological, genetic, social, psychological, and environmental factors that predispose individuals to drug addiction.

Background Information

Individuals make choices to begin using drugs. Some people begin using drugs to relieve a medical condition and then continue to use the drugs after the medical need is over. Children who are depressed or who have a psychiatric disorder sometimes begin using illicit drugs to self-medicate. Other people begin taking drugs to feel pleasure, to escape the pressures of life, or to alter their view of reality. This voluntary initiation into the world of addictive drugs has strongly influenced society's view of drug abuse and drug addiction and their treatment.

When does drug abuse become drug addiction? No one becomes addicted with the first use of a drug. Drug abuse and drug addiction can be thought of as points along a continuum. Any use of a mind-altering drug or the inappropriate use of medication (either prescription or over-the-counter drugs) is drug abuse, but the point when drug abuse becomes drug addiction is less clear. Different drug abusers may reach the point of addiction at different stages. Scientists continue to investigate the factors that cause the switch between the two points.

progression from no drug use to drug abuse and drug addiction
Figure 4.1: The continuum of drug abuse and addiction.

Currently, drug addiction is defined as the continued compulsive use of drugs in spite of adverse health or social consequences.1 Drug addicts have lost control of their drug use. Individuals who are addicted to drugs often become isolated from family or friends, have difficulty at work or school, and become involved with crime and the criminal justice system. For addicts, continuing their drug habit becomes their primary focus in life.

Certain drugs, including opiates and alcohol, cause strong physical reactions in the body when drug use stops. When a heroin addict stops taking heroin, he or she can experience a variety of symptoms ranging from watery eyes and a runny nose to irritability and loss of appetite and then diarrhea, shivering, sweating, abdominal cramps, increased sensitivity to pain, and sleep problems.2 In general, withdrawal from heroin makes the abuser feel miserable. Withdrawal from other drugs, such as cocaine and amphetamines, does not lead to strong physical reactions. For most drugs, physical withdrawal symptoms can usually be controlled effectively with medications. Even though withdrawal from some drugs does not cause the abuser to have physical reactions, stopping drug use is difficult because of the changes the drugs have caused in the brain. Once the drugs stop, the abuser will have cravings, or intense desire for the drugs.3 Craving arises from the brain's need to maintain a state of homeostasis that now includes the presence of the drug. A person may experience cravings at any stage of drug abuse or addiction, even early in the experimentation phase of drug abuse. Cravings have a physical basis in the brain. Using PET imaging, scientists have shown that just seeing images of drug paraphernalia can stimulate the amygdala (part of the brain that controls memory) in drug addicts.4

Drugs of addiction do not merely cause short-term changes in an individual's cognitive skill and behavior. A drug "high" lasts a short time, ranging from less than an hour to 12 hours, depending on the drug and dose. The changes in the brain that result from continued drug use, however, can last a long time. Scientists believe that some of these changes disappear when drug use stops; some disappear within a short time after drug use stops, and other changes are potentially permanent. One of the first changes in the brain that occurs in response to repeated drug abuse is tolerance. Tolerance develops when a person needs increasing doses of a drug to achieve the same "high" or "rush" that previously resulted from a lower dose of the drug. Two primary mechanisms underlie the development of tolerance.3 First, the body may become more efficient at metabolizing the drug, thereby reducing the amount that enters the bloodstream. Second, the cells of the body and brain may become more resistant to the effect of the drug. For example, after continued cocaine use, neurons decrease the number of dopamine receptors, which results in decreasing cocaine's stimulatory effect. Opiates, on the other hand, do not cause a change in the number of receptors. Instead the opiate receptors become less efficient in activating the second messenger system, thus reducing the effects of the opiates.

Drugs can cause other long-term changes in the anatomy and physiology of the brain's neurons. Alcohol, methamphetamine, and MDMA (Ecstasy) can kill neurons.3 Unlike other types of cells in the body, neurons in many parts of the brain have little or no capability to regenerate. (Recent studies have shown that the adult human brain can generate new neurons in the hippocampus, a part of the brain important for learning and memory.5 Other parts of the brain do not show this ability.) Alcohol kills neurons in the part of the brain that helps create new memories. If those neurons die, the capability for learning decreases. Methamphetamine kills dopamine-containing neurons in animals and possibly in humans as well.6 MDMA kills neurons that produce another neurotransmitter called serotonin.7 In addition to neurotoxic effects, drugs can significantly alter the activity of the brain. PET scans of cocaine addicts show that the metabolism of glucose, the primary fuel for cells, is drastically reduced in the brain, and that this decrease in metabolism can last for many months following cessation of drug abuse.8

In addition to the functional and anatomical changes in the brain, drug abuse puts addicts at higher risk for other health problems. For example, inhalant abuse can lead to disruption of heart rhythms, and snorting cocaine can lead to ulcerations in the mucous membranes of the nose. In addition, drug addicts are at increased risk of contracting HIV or AIDS through shared needles. Similarly, hepatitis B and hepatitis C are much more common among drug addicts than the general population. Tuberculosis is another concern. Drug abuse and addiction also are contributing factors in motor vehicle accidents.

Animals as Research Models

Why do scientists study the brains of nonhuman animals? Scientists use animals in research studies because the use of humans is either impossible or unethical. For example, when scientists investigate the effects of drugs of abuse on brain function, either the question they are asking cannot be answered in a living human or it would be inappropriate to give drugs to them.

The use of animals as subjects in scientific research has contributed to many important advances in scientific and medical knowledge. Scientists must analyze the goals of their experiments in order to select an animal species that is appropriate. Scientists often use fruit flies (Drosophila melanogaster) when they want to learn more about genetics. However, fruit flies are not a very good model if a scientist is investigating muscle physiology; a mouse may be a better model for those experiments. Although scientists strive to develop nonanimal models for research, these models often do not duplicate the complex animal or human body. Continued progress toward a more complete understanding of human and animal health depends on the use of living animals.

Guidelines for the Use of Animals in Scientific Research

Scientists who use animals as research subjects must abide by federal policies that govern the use and care of vertebrate animals in research. The Public Health Service established a policy that dictates specific requirements for animal care and use in research. This policy conforms to the Health Research Extension Act of 1985 (Public Law 99-158) and applies to all research, research training, biological testing, and other activities that involve animals.14 The principles for using and caring for vertebrate animals in research and testing are as follows:

  • The transportation, care, and use of animals should be in accordance with the Animal Welfare Act and other applicable federal laws, guidelines, and policies.
  • Procedures involving animals should be designed with consideration of their relevance to human or animal health, the advancement of knowledge, or the good of society.
  • The animals selected should be of an appropriate species and quality and the minimum number required to obtain valid results. Methods such as mathematical models, computer simulation, and in vitro biological systems should be considered.
  • Procedures should minimize discomfort, distress, and pain to the animals.
  • Procedures that may cause more than momentary or slight pain should be performed with appropriate sedation, analgesia, or anesthesia.
  • Animals that would suffer severe or chronic pain or distress that cannot be relieved should be painlessly killed.
  • The living conditions of animals should be appropriate for the species. The housing, feeding, and care of animals must be directed by a veterinarian or a trained, experienced scientist.
  • Investigators who work with animals must be appropriately qualified and trained for conducting procedures on living animals.
  • Exceptions to any of these principles must be reviewed and approved by an appropriate committee prior to the procedure.
  • An Institutional Animal Care and Use Committee (IACUC) oversees all animal use in each institution where animal research is conducted. The IACUC must give approval for the research plan and species to be used. IACUCs include both scientists and nonscientists from outside the institution. The nonscientists are often representatives of humane
Information from the NIH's lessons on Drugs, Brain & Behavior.

Tuesday, November 17, 2009

Neurons & Neurotransmitters

The goal for today was for students to understand the parts of a neuron and understand how signals are transported between neurons.

The major concept for today was: Neurons convey information using electrical and chemical signals.

After reviewing the homework, we moved on to what a neuron looks like and how signals are transported between neurons.Click the picture above to link to the animation that describes the role that electrical and chemical signals and the transmission of signals between neurons.Click the picture above to see how neurotransmitters influence the electrical activity in neurons.

Homework:
Click on the picture below to link to the animation. You should skip Case A because it doesn't seem that the animation is working properly. You should practice with Cases B, C and D. In order to be successful with this you need the following information:

Dopamine: The neurotransmitter that produces feelings of pleasure when released by the brain in the reward system. Dopamine is inhibitory.

GABA (gamma-aminobutyric acid): The major inhibitory neurotransmitter in the brain

Glutamate: the most common excitatory neurotransmitter in the brain.

Monday, November 16, 2009

Starting our new section: Drugs, Brain & Behavior

Is this elephant missing a leg?
Today we started our new section on Anatomy & Physiology with the brain. Students completed a "What I know, What I think I know, What I want to know" about the brain & drugs. We focuses on the parts of the brain and their functions. Students examined PET Scans of brains to see how different regions of the brain are responsible for different functions.

Homework:
1. Finish the complete the activity on interpreting PET Scans, you can link to it here.

Bonus Point:
2. Read the story about Phineas Gage below and answer the two questions at the end of the article.

Phineas Gage Article & Questions

Read this article below and answer the two questions at the end of the article.

Due to an accident while he was working, Phineas Gage made a contribution to the under-standing of how the brain works. In 1848, 25-year old Phineas Gage worked for the Rutland and Burlington Railroad Company laying railroad tracks across Vermont. Before railroad track could be laid, however, the uneven ground needed to be leveled. Gage and coworkers had to drill holes in the stone, put explosive in the holes, cover the explosive with sand, and then use a fuse and tamping iron to trigger an explosion. One day, an accident occurred that changed Gage’s life forever. The explosive went off early sending the tamping iron, which was 1.25 inches in diameter and 43 inches long, shooting into Gage’s face, through his skull and brain, and out the top of his head. The tamping iron landed about 25 yards away. Gage regained consciousness within a few minutes. Amazingly, he not only survived the blast, but he was able to talk and to walk! His coworkers took him to the doctor who cleaned and bandaged the wounds, the standard medical treatment at the time.

Although Gage survived the physical injuries from the blast, he was a changed man. He appeared to be just as intelligent as before the accident, and he did not have any impairment in movement, speech, or memory. But, something was different. Prior to the accident, he was a responsible, intelligent and likeable person. After the accident, he was irresponsible, used profanity extensively, and demonstrated no respect for social customs. His friends commented that “Gage was no longer Gage.” He could not hold the responsible jobs that he had prior to the accident and apparently wandered for the next several years. Phineas Gage ended up in San Francisco in the custody of his family where he died approximately 12 years after the accident.
Twenty years after the accident, the physician who treated Gage correlated the behavioral changes with damage to the frontal region of the brain. At the time, the brain was thought to control language and movement, but the suggestion that the brain functioned to process emotions and social behavior was new. In addition, scientists at the time believed the brain lacked localized functions. Unknowingly, Phineas Gage contributed to our understanding of how the brain processes information.

In the 1990s, scientists used their improved understanding of brain function, computer modeling techniques, and new data from Gage’s skull. Based on this information, they found that the accident damaged both hemispheres of the frontal lobe, which is the part of the brain that influences social behavior. Today, physicians see patients with damage to the frontal lobe that has occurred through motor vehicle accidents, gun accidents, or major falls. These individuals, like Phineas Gage, often have dramatic changes in their emotional and decision-making abilities.

1. How did Phineas Gage change after the accident?
2. How did Phineas Gage’s accident change scientists’ understanding of the brain?

Friday, November 13, 2009

Cell Cycle & Cancer Test

Today students had their test on the cell cycle and cancer. Yesterday and on Wednesday students presented their cancer flyers and we all learned a lot about different types of cancer, such as:

Kaposi Sarcoma
Bone Cancer
Leukemia
Eye Cancer
Brain Tumors in Adults and in Children
Melanoma
Lung Cancer - Small Cell
Liver Cancer
and many others.

After the test students were given review questions for the final exam. Can you believe we only have 17 more class periods until the final exam?! These review questions are due on Monday.

Tuesday, November 10, 2009

History of Cancer

Click the image below to link to a timeline on cancer.

Monday, November 9, 2009

Types of Cancer Flyers

Today in class students started to work flyers about different types of cancer. The guidelines are posted below and I will put up a sample later today.

G Block: yours is due on Wednesday Nov. 11

D & F blocks: yours is due on Thursday Nov. 12

Go to: www.cancer.org

Under “learn about cancer” click choose a topic. No students in the same class may have the same topic.

Here are the guidelines:

1 page

2-3 figures/pictures

Name of your type of cancer:

Causes/treatments

Signs/symptoms

Diagnosis

Stages

2-3 key stats

A footer or use footnotes to cite your sources. Print the flyer on the colored sheet of paper you were given in class. You most certainly may embellish your flyer with markers/crayons/colored pencils. You will share this with the class the day it is due.

NOTE: The majority of students in F and G blocks did not remember to bring their computer to class, so they picked their cancer topics and spent the remainder of class reading and answering questions from the "What is Cancer?" packet. If you are in F or G block, please make sure you bring your computer to class on Tuesday.

Saturday, November 7, 2009

Welcome Family!

It's family weekend, which means that parents were able to sit in on classes and see what a day in the life of their student is like at TASIS. Yesterday we used an animation from the Nobel Prize Website to examine how the cell cycle is controlled. We also watch a video clip on bacterial replication (called binary fission) and played some trivia on cancer.

Thursday, November 5, 2009

Mitosis & Microscopes

Today students had a "fake" quiz on Mitosis to see how well they know the material. After going over the quiz and last night's homework, students continued to practice finding the stages of mitosis using whitefish blastula and onion root cells.


Homework: None! Enjoy the night off :)

Tuesday, November 3, 2009

Microscopes, Limits to cell size, stages of mitosis

Today students took notes on the three types of microscopes, limits to cell size and the stages of mitosis.
Homework: Complete "Mitosis Homework #1."

Monday, November 2, 2009

Starting Mitosis

Today students examined cells undergoing mitosis. Here's what happens in the cell:



Homework: Read pages 246-248. Draw the stages of mitosis, in order, with labels (centrioles, nuclear envelope, chromatin, centromere and spindle -- where appropriate).